Documentation

dotToFile :: FilePath -> DotGraph DotId -> IO () #

dotToString :: DotGraph DotId -> [Char] #

dynamicToColor :: Int -> Attribute #

pickLabelColor :: [Int] -> Attribute #

toDotLabel :: Text -> Label #

toAttr :: AttributeName -> Text -> CustomAttribute #

metaToAttr :: Map Text [Double] -> [CustomAttribute] #

groupIdToDotId :: PhyloGroupId -> DotId #

branchIdToDotId :: PhyloBranchId -> DotId #

periodIdToDotId :: Period -> DotId #

branchToDotNode :: PhyloBranch -> Int -> Dot DotId #

periodToDotNode :: (Date, Date) -> (Text, Text) -> Dot DotId #

groupToDotNode :: Vector Ngrams -> PhyloGroup -> Int -> Dot DotId #

toDotEdge' :: DotId -> DotId -> [Char] -> [Char] -> EdgeType -> Dot DotId #

toDotEdge :: DotId -> DotId -> [Char] -> EdgeType -> Dot DotId #

mergePointers :: [PhyloGroup] -> Map (PhyloGroupId, PhyloGroupId) Double #

mergePointersMemory :: [PhyloGroup] -> [((PhyloGroupId, PhyloGroupId), (Double, Double))] #

mergeAncestors :: [PhyloGroup] -> [((PhyloGroupId, PhyloGroupId), Double)] #

toBid :: PhyloGroup -> [PhyloBranch] -> Int #

exportToDot :: Phylo -> PhyloExport -> DotGraph DotId #

filterByBranchSize :: Double -> PhyloExport -> PhyloExport #

processFilters :: [Filter] -> Quality -> PhyloExport -> PhyloExport #

branchToIso :: [PhyloBranch] -> [PhyloBranch] #

branchToIso' :: Double -> Double -> [PhyloBranch] -> [PhyloBranch] #

sortByHierarchy :: Int -> [PhyloBranch] -> [PhyloBranch] #

sortByBirthDate :: Order -> PhyloExport -> PhyloExport #

processSort :: Sort -> SeaElevation -> PhyloExport -> PhyloExport #

conditional :: Ord a => Map (a, a) Double -> a -> a -> Double #

genericity :: Map (Int, Int) Double -> [Int] -> Int -> Double #

specificity :: Map (Int, Int) Double -> [Int] -> Int -> Double #

inclusion :: Map (Int, Int) Double -> [Int] -> Int -> Double #

ngramsMetrics :: Phylo -> PhyloExport -> PhyloExport #

branchDating :: PhyloExport -> PhyloExport #

processMetrics :: Phylo -> PhyloExport -> PhyloExport #

nk :: Int -> [[Int]] -> Int #

tf :: Int -> [[Int]] -> Double #

idf :: Int -> [[Int]] -> Double #

findTfIdf :: [[Int]] -> [(Int, Double)] #

findEmergences :: [PhyloGroup] -> Map Int Double -> [(Int, Double)] #

mostEmergentTfIdf :: Int -> Map Int Double -> Vector Ngrams -> PhyloExport -> PhyloExport #

getNthMostMeta :: Int -> [Double] -> [Int] -> [Int] #

mostInclusive :: Int -> Vector Ngrams -> PhyloExport -> PhyloExport #

mostEmergentInclusive :: Int -> Vector Ngrams -> PhyloExport -> PhyloExport #

processLabels :: [PhyloLabel] -> Vector Ngrams -> Map Int Double -> PhyloExport -> PhyloExport #

toDynamics :: FdtId -> [PhyloGroup] -> PhyloGroup -> Map FdtId (Date, Date) -> Double #

type FdtId = Int #

processDynamics :: [PhyloGroup] -> [PhyloGroup] #

getGroupThr :: Double -> PhyloGroup -> Double #

toAncestor :: Double -> Map Int Double -> PhyloSimilarity -> Double -> [PhyloGroup] -> PhyloGroup -> PhyloGroup #

headsToAncestors :: Double -> Map Int Double -> PhyloSimilarity -> Double -> [PhyloGroup] -> [PhyloGroup] -> [PhyloGroup] #

toHorizon :: Phylo -> Phylo #

getPreviousChildIds :: Scale -> Int -> Period -> [Period] -> Phylo -> [PhyloGroupId] #

toPhyloExport :: Phylo -> DotGraph DotId #

traceExportBranches :: [PhyloBranch] -> [PhyloBranch] #

tracePhyloAncestors :: [[PhyloGroup]] -> [[PhyloGroup]] #

tracePhyloInfo :: Phylo -> Phylo #

traceExportGroups :: [PhyloGroup] -> [PhyloGroup] #