Copyright	(c) CNRS 2017-Present
License	AGPL + CECILL v3
Maintainer	team@gargantext.org
Stability	experimental
Portability	POSIX
Safe Haskell	None
Language	Haskell2010

Gargantext.Core.Viz.Phylo.PhyloExport

Description

Synopsis

dotToFile :: FilePath -> DotGraph DotId -> IO ()
dotToString :: DotGraph DotId -> [Char]
dynamicToColor :: Double -> Attribute
pickLabelColor :: [Double] -> Attribute
toDotLabel :: Text -> Label
toAttr :: AttributeName -> Text -> CustomAttribute
metaToAttr :: Map Text [Double] -> [CustomAttribute]
groupIdToDotId :: PhyloGroupId -> DotId
branchIdToDotId :: PhyloBranchId -> DotId
periodIdToDotId :: PhyloPeriodId -> DotId
groupToTable :: Vector Ngrams -> PhyloGroup -> Label
branchToDotNode :: PhyloBranch -> Int -> Dot DotId
periodToDotNode :: (Date, Date) -> (Text, Text) -> Dot DotId
groupToDotNode :: Vector Ngrams -> PhyloGroup -> Int -> Dot DotId
toDotEdge :: DotId -> DotId -> [Char] -> EdgeType -> Dot DotId
mergePointers :: [PhyloGroup] -> Map (PhyloGroupId, PhyloGroupId) Double
mergeAncestors :: [PhyloGroup] -> [((PhyloGroupId, PhyloGroupId), Double)]
toBid :: PhyloGroup -> [PhyloBranch] -> Int
exportToDot :: Phylo -> PhyloExport -> DotGraph DotId
filterByBranchSize :: Double -> PhyloExport -> PhyloExport
processFilters :: [Filter] -> Quality -> PhyloExport -> PhyloExport
branchToIso :: [PhyloBranch] -> [PhyloBranch]
branchToIso' :: Double -> Double -> [PhyloBranch] -> [PhyloBranch]
sortByHierarchy :: Int -> [PhyloBranch] -> [PhyloBranch]
sortByBirthDate :: Order -> PhyloExport -> PhyloExport
processSort :: Sort -> SeaElevation -> PhyloExport -> PhyloExport
conditional :: Ord a => Map (a, a) Double -> a -> a -> Double
genericity :: Map (Int, Int) Double -> [Int] -> Int -> Double
specificity :: Map (Int, Int) Double -> [Int] -> Int -> Double
inclusion :: Map (Int, Int) Double -> [Int] -> Int -> Double
ngramsMetrics :: Phylo -> PhyloExport -> PhyloExport
branchDating :: PhyloExport -> PhyloExport
processMetrics :: Phylo -> PhyloExport -> PhyloExport
nk :: Int -> [[Int]] -> Int
tf :: Int -> [[Int]] -> Double
idf :: Int -> [[Int]] -> Double
findTfIdf :: [[Int]] -> [(Int, Double)]
findEmergences :: [PhyloGroup] -> Map Int Double -> [(Int, Double)]
mostEmergentTfIdf :: Int -> Map Int Double -> Vector Ngrams -> PhyloExport -> PhyloExport
getNthMostMeta :: Int -> [Double] -> [Int] -> [Int]
mostInclusive :: Int -> Vector Ngrams -> PhyloExport -> PhyloExport
mostEmergentInclusive :: Int -> Vector Ngrams -> PhyloExport -> PhyloExport
processLabels :: [PhyloLabel] -> Vector Ngrams -> Map Int Double -> PhyloExport -> PhyloExport
toDynamics :: Int -> [PhyloGroup] -> PhyloGroup -> Map Int (Date, Date) -> Double
processDynamics :: [PhyloGroup] -> [PhyloGroup]
getGroupThr :: Double -> PhyloGroup -> Double
toAncestor :: Double -> Map Int Double -> Proximity -> Double -> [PhyloGroup] -> PhyloGroup -> PhyloGroup
headsToAncestors :: Double -> Map Int Double -> Proximity -> Double -> [PhyloGroup] -> [PhyloGroup] -> [PhyloGroup]
toHorizon :: Phylo -> Phylo
getPreviousChildIds :: Level -> Int -> PhyloPeriodId -> [PhyloPeriodId] -> Phylo -> [PhyloGroupId]
toPhyloExport :: Phylo -> DotGraph DotId
traceExportBranches :: [PhyloBranch] -> [PhyloBranch]
tracePhyloAncestors :: [[PhyloGroup]] -> [[PhyloGroup]]
tracePhyloInfo :: Phylo -> Phylo
traceExportGroups :: [PhyloGroup] -> [PhyloGroup]

Documentation

dotToFile :: FilePath -> DotGraph DotId -> IO () Source #

Dot export | --

dotToString :: DotGraph DotId -> [Char] Source #

dynamicToColor :: Double -> Attribute Source #

pickLabelColor :: [Double] -> Attribute Source #

toDotLabel :: Text -> Label Source #

toAttr :: AttributeName -> Text -> CustomAttribute Source #

metaToAttr :: Map Text [Double] -> [CustomAttribute] Source #

groupIdToDotId :: PhyloGroupId -> DotId Source #

branchIdToDotId :: PhyloBranchId -> DotId Source #

periodIdToDotId :: PhyloPeriodId -> DotId Source #

groupToTable :: Vector Ngrams -> PhyloGroup -> Label Source #

branchToDotNode :: PhyloBranch -> Int -> Dot DotId Source #

periodToDotNode :: (Date, Date) -> (Text, Text) -> Dot DotId Source #

groupToDotNode :: Vector Ngrams -> PhyloGroup -> Int -> Dot DotId Source #

toDotEdge :: DotId -> DotId -> [Char] -> EdgeType -> Dot DotId Source #

mergePointers :: [PhyloGroup] -> Map (PhyloGroupId, PhyloGroupId) Double Source #

mergeAncestors :: [PhyloGroup] -> [((PhyloGroupId, PhyloGroupId), Double)] Source #

toBid :: PhyloGroup -> [PhyloBranch] -> Int Source #

exportToDot :: Phylo -> PhyloExport -> DotGraph DotId Source #

filterByBranchSize :: Double -> PhyloExport -> PhyloExport Source #

Filter | --

processFilters :: [Filter] -> Quality -> PhyloExport -> PhyloExport Source #

branchToIso :: [PhyloBranch] -> [PhyloBranch] Source #

Sort | --

branchToIso' :: Double -> Double -> [PhyloBranch] -> [PhyloBranch] Source #

sortByHierarchy :: Int -> [PhyloBranch] -> [PhyloBranch] Source #

sortByBirthDate :: Order -> PhyloExport -> PhyloExport Source #

processSort :: Sort -> SeaElevation -> PhyloExport -> PhyloExport Source #

conditional :: Ord a => Map (a, a) Double -> a -> a -> Double Source #

Metrics | --

Return the conditional probability of i knowing j

genericity :: Map (Int, Int) Double -> [Int] -> Int -> Double Source #

Return the genericity score of a given ngram

specificity :: Map (Int, Int) Double -> [Int] -> Int -> Double Source #

Return the specificity score of a given ngram

inclusion :: Map (Int, Int) Double -> [Int] -> Int -> Double Source #

Return the inclusion score of a given ngram

ngramsMetrics :: Phylo -> PhyloExport -> PhyloExport Source #

branchDating :: PhyloExport -> PhyloExport Source #

processMetrics :: Phylo -> PhyloExport -> PhyloExport Source #

nk :: Int -> [[Int]] -> Int Source #

Taggers | --

tf :: Int -> [[Int]] -> Double Source #

idf :: Int -> [[Int]] -> Double Source #

findTfIdf :: [[Int]] -> [(Int, Double)] Source #

findEmergences :: [PhyloGroup] -> Map Int Double -> [(Int, Double)] Source #

mostEmergentTfIdf :: Int -> Map Int Double -> Vector Ngrams -> PhyloExport -> PhyloExport Source #

getNthMostMeta :: Int -> [Double] -> [Int] -> [Int] Source #

mostInclusive :: Int -> Vector Ngrams -> PhyloExport -> PhyloExport Source #

mostEmergentInclusive :: Int -> Vector Ngrams -> PhyloExport -> PhyloExport Source #

processLabels :: [PhyloLabel] -> Vector Ngrams -> Map Int Double -> PhyloExport -> PhyloExport Source #

toDynamics :: Int -> [PhyloGroup] -> PhyloGroup -> Map Int (Date, Date) -> Double Source #

Dynamics | --

processDynamics :: [PhyloGroup] -> [PhyloGroup] Source #

getGroupThr :: Double -> PhyloGroup -> Double Source #

horizon | --

toAncestor :: Double -> Map Int Double -> Proximity -> Double -> [PhyloGroup] -> PhyloGroup -> PhyloGroup Source #

headsToAncestors :: Double -> Map Int Double -> Proximity -> Double -> [PhyloGroup] -> [PhyloGroup] -> [PhyloGroup] Source #

toHorizon :: Phylo -> Phylo Source #

getPreviousChildIds :: Level -> Int -> PhyloPeriodId -> [PhyloPeriodId] -> Phylo -> [PhyloGroupId] Source #

toPhyloExport :: Phylo -> DotGraph DotId Source #

phyloExport | --

traceExportBranches :: [PhyloBranch] -> [PhyloBranch] Source #

tracePhyloAncestors :: [[PhyloGroup]] -> [[PhyloGroup]] Source #

tracePhyloInfo :: Phylo -> Phylo Source #

traceExportGroups :: [PhyloGroup] -> [PhyloGroup] Source #