Copyright	(c) CNRS 2017
License	AGPL + CECILL v3
Maintainer	team@gargantext.org
Stability	experimental
Portability	POSIX
Safe Haskell	Safe-Inferred
Language	Haskell2010

Gargantext.Core.Text.Corpus.API.Pubmed

Contents

Internals for testing

Description

Synopsis

get :: Text -> RawQuery -> Maybe Limit -> IO (Either ClientError (Maybe Integer, ConduitT () HyperdataDocument IO ()))
newtype ESearch = ESearch {
- _ESearch :: [EscapeItem]
}
convertQuery :: Query -> ESearch
getESearch :: ESearch -> Text

Documentation

get :: Text -> RawQuery -> Maybe Limit -> IO (Either ClientError (Maybe Integer, ConduitT () HyperdataDocument IO ())) #

Internals for testing

newtype ESearch #

A pubmed query. See: https://www.ncbi.nlm.nih.gov/books/NBK25499/#chapter4.ESearch The documentation for PUBMED says: Values for query keys may also be provided in term if they are preceeded by a # (%23 in the URL). While only one query_key parameter can be provided to ESearch, any number of query keys can be combined in term. Also, if query keys are provided in term, they can be combined with OR or NOT in addition to AND. Example: esearch.fcgi?db=pubmed&term=%231+AND+asthma&WebEnv=string&usehistory=y

Therefore, we can pretty-print our Query back into something that PubMed could understand.

Constructors

ESearch
Fields _ESearch :: [EscapeItem]

Instances

Instances details

Monoid ESearch #
Instance details Defined in Gargantext.Core.Text.Corpus.API.Pubmed Methods mempty :: ESearch # mappend :: ESearch -> ESearch -> ESearch # mconcat :: [ESearch] -> ESearch #
Semigroup ESearch #
Instance details Defined in Gargantext.Core.Text.Corpus.API.Pubmed Methods (<>) :: ESearch -> ESearch -> ESearch # sconcat :: NonEmpty ESearch -> ESearch # stimes :: Integral b => b -> ESearch -> ESearch #
Show ESearch #
Instance details Defined in Gargantext.Core.Text.Corpus.API.Pubmed Methods showsPrec :: Int -> ESearch -> ShowS # show :: ESearch -> String # showList :: [ESearch] -> ShowS #
Eq ESearch #
Instance details Defined in Gargantext.Core.Text.Corpus.API.Pubmed Methods (==) :: ESearch -> ESearch -> Bool # (/=) :: ESearch -> ESearch -> Bool #

convertQuery :: Query -> ESearch #

getESearch :: ESearch -> Text #

Returns an url encoded query ready to be sent to pubmed.