Documentation

mergeGroups :: [Cooc] -> PhyloGroupId -> Map PhyloGroupId PhyloGroupId -> [PhyloGroup] -> PhyloGroup #

addPhyloScale :: Scale -> Phylo -> Phylo #

toNextScale :: Phylo -> [PhyloGroup] -> Phylo #

toPairs :: SynchronyStrategy -> [PhyloGroup] -> [(PhyloGroup, PhyloGroup)] #

toDiamonds :: [PhyloGroup] -> [[PhyloGroup]] #

groupsToEdges :: PhyloSimilarity -> Synchrony -> Double -> Map Int Double -> [PhyloGroup] -> [((PhyloGroup, PhyloGroup), Double)] #

toParentId :: PhyloGroup -> PhyloGroupId #

reduceGroups :: PhyloSimilarity -> Synchrony -> Map Date Double -> Map Date Cooc -> [PhyloGroup] -> [PhyloGroup] #

chooseClusteringStrategy :: Synchrony -> [[PhyloGroup]] -> [[PhyloGroup]] #

levelUpAncestors :: [PhyloGroup] -> [PhyloGroup] #

synchronicClustering :: Phylo -> Phylo #